Have you checked the carier bearing in the rear driveshaft? It is the rubber thing that supports the rear driveshaft half way between the transmission and the rear axle. Grab the shaft and try to push it up and pull it down. It should move a little, but not clunk into the crossmember that it passes through.TROOPY said:
It is right where the driveshaft passes through this crossmember:

Also check the u-bolts that hold the axle to the leaf springs, and the leaf spring bushings. Something could be loose and causing the axle to vibrate. On the same line, check the engine/transmission mounts. Could it be the clutch slipping?
-Tad
-Tad