I have 15" Snowflake factory mag wheels on my '90 LS with Big Brake Mod. The clearance between the caliper and the inside of the wheel is Very Close.
But doesn't hit and never has, in over 13 years. Can't speak for any other style of wheels, but have never heard of anyone doing the Mod and having wheel clearance issues.
Use Gen II calipers, pads, rotors, and dust shields from '92-up Troopers and '93-up V6 Rodeos. Use brake hoses from a Gen II Rodeo.